15 Feb 2017

-Omics Publication Library

 

15 Feb 2017
-Omics Publication Library

 

Lipidomics

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Diazobutanone-assisted isobaric labelling of phospholipids and sulfated glycolipids enables multiplexed quantitative lipidomics using tandem mass spectrometry

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LipiDex 2 Integrates MSn Tree-Based Fragmentation Methods and Quality Control Modules to Improve Discovery Lipidomics

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Plasma metabolomics supports non-fasted sampling for metabolic profiling across a spectrum of glucose tolerance in the Nile rat model for type 2 diabetes

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Improved Structural Characterization of Glycerophospholipids and Sphingomyelins with Real-Time Library Searching

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PKA regulatory subunit Bcy1 couples growth, lipid metabolism, and fermentation during anaerobic xylose growth in Saccharomyces cerevisiae

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Mass Spectrometry-Based Multi-omics Integration with a Single Set of C. elegans Samples

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Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut

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Spatial Snapshots of Amyloid Precursor Protein Intramembrane Processing via Early Endosome Proteomics

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Maximizing MS/MS Acquisition for Lipidomics Using Capillary Separation and Orbitrap Tribrid Mass Spectrometer

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Rapid and Gentle Immunopurification of Brain Synaptic Vesicles

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Lipidomic analysis of tissue culture cells, tissues, and purified organelles

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PKM2-TMEM33 axis regulates lipid homeostasis in cancer cells by controlling SCAP stability

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Large-Scale Multi-omic Analysis of COVID-19 Severity

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Multi-Omic Single-Shot Technology for Integrated Proteome and Lipidome Analysis

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A large-scale genome–lipid association map guides lipid identification

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Accelerating Lipidomic Method Development through in Silico Simulation

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Single-Shot Capillary Zone Electrophoresis-Tandem Mass Spectrometry Produces Over 4400 Phosphopeptide Identifications from 220 ng Sample

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Mapping Lipid Fragmentation for Tailored Mass Spectral Libraries

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An Isoprene Lipid-Binding Protein Promotes Eukaryotic Coenzyme Q Biosynthesis

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Systems Analyses Reveal Physiological Roles and Genetic Regulators of Liver Lipid Species

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Genetic Regulation of Plasma Lipid Species and Their Association with Metabolic Phenotypes

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LipiDex: A software package for lipid identification

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NANOG Is Multiply Phosphorylated and Directly Modified by ERK2 and CDK1 In Vitro

Proteomics

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1483-P: Identifying Conditional Dependence of Proteins Regulating Islet Biology with Machine Learning

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Boosting the Sensitivity of Quantitative Single-Cell Proteomics with Infrared-Tandem Mass Tags

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Chemical Proteomics Strategies for Analyzing Protein Lipidation Reveal the Bacterial O-Mycoloylome

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Cysteine Counting via Isotopic Chemical Labeling for Intact Mass Proteoform Identifications in Tissue

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Pptc7 maintains mitochondrial protein content by suppressing receptor-mediated mitophagy

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MmuPV1 E6 induces cell proliferation and other hallmarks of cancer

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A transcriptional network governing ceramide homeostasis establishes a cytokine-dependent developmental process

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DiLeu Isobaric Labeling Coupled with Limited Proteolysis Mass Spectrometry for High-Throughput Profiling of Protein Structural Changes in Alzheimer’s Disease

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Mass Spectrometry-Based Multi-omics Integration with a Single Set of C. elegans Samples

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Evaluation of Orbitrap Ascend Tribrid Mass Spectrometer for Shotgun Proteomics

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Large‐scale proteome and metabolome analysis of CSF implicates altered glucose and carbon metabolism and succinylcarnitine in Alzheimer’s disease

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Aim18p and Aim46p are chalcone isomerase domain-containing mitochondrial hemoproteins in Saccharomyces cerevisiae

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Global detection of human variants and isoforms by deep proteome sequencing

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Recent advances in isobaric labeling and applications in quantitative proteomics

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Spatial Snapshots of Amyloid Precursor Protein Intramembrane Processing via Early Endosome Proteomics

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The transcriptional elongation factor CTR9 demarcates PRC2-mediated H3K27me3 domains by altering PRC2 subtype equilibrium

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Rapid and Gentle Immunopurification of Brain Synaptic Vesicles

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Tcof1 hHploinsufficiency Promotes Early T Cell Precursor-like Leukemia in NrasQ61R/+ Mice

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Discovery Proteomics Analysis Determines That Driver Oncogenes Suppress Antiviral Defense Pathways Through Reduction in Interferon-β Autocrine Stimulation

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Rapid and Gentle Immunopurification of Brain Synaptic Vesicles

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High-Throughput, Comprehensive Single-Cell Proteomic Analysis of Xenopus laevis Embryos at the 50-Cell Stage Using a Microplate-Based MICROFASP System

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Practical Effects of Intramolecular Hydrogen Rearrangement in Electron Transfer Dissociation-Based Proteomics

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Rapid preparation of human blood plasma for bottom-up proteomics analysis

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UbiB proteins regulate cellular CoQ distribution in Saccharomyces cerevisiae

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Acetyl-CoA flux from the cytosol to the ER regulates engagement and quality of the secretory pathway

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Proteome-wide and matrisome-specific alterations during human pancreas development and maturation

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A Deep Analysis of the Proteomic and Phosphoproteomic Alterations that Occur in Skeletal Muscle after the Onset of Immobilization

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Pilot Proteomic Analysis of Cerebrospinal Fluid in Alzheimer’s Disease

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Peptide Correlation Analysis (PeCorA) Reveals Differential Proteoform Regulation

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Large-Scale Multi-omic Analysis of COVID-19 Severity

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Multi-Omic Single-Shot Technology for Integrated Proteome and Lipidome Analysis

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Survival Following Traumatic Brain Injury in Drosophila Is Increased by Heterozygosity for a Mutation of the NF-κB Innate Immune Response Transcription Factor Relish

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Global Phosphoproteome Analysis Using High-Field Asymmetric Waveform Ion Mobility Spectrometry on a Hybrid Orbitrap Mass Spectrometer

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Quantitative shotgun proteome analysis by direct infusion

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Integrated Label-Free and 10-plex DiLeu Isobaric Tag Quantitative Methods for Profiling Changes in the Mouse Hypothalamic Neuropeptidome and Proteome: Assessment of the Impact of the Gut Microbiome

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Optical Fiber-Enabled Photoactivation of Peptides and Proteins

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Mapping physiological ADP-ribosylation using Activated Ion Electron Transfer Dissociation (AI-ETD)

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Highly multiplexed quantitative proteomic and phosphoproteomic analyses in vascular smooth muscle cell dedifferentiation

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Isobaric labeling strategy utilizing 4-plex N,N-dimethyl leucine (DiLeu) tags reveals proteomic changes induced by chemotherapy in cerebrospinal fluid of children with B-cell acute lymphoblastic leukemia

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Established biomarkers of COPD reflect skeletal muscle integrity’s response to exercise in an animal model of pulmonary emphysema

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Urinary metabolomic and proteomic analyses in a mouse model of prostatic inflammation

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21-plex DiLeu Isobaric Tags for High-throughput Quantitative Proteomics

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Tailoring a Global Iron Regulon to a Uropathogen

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Spatiotemporal proteomics reveals the molecular consequences of hormone treatment in a mouse model of lower urinary tract dysfunction

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Proteomic modulation in the dorsal spinal cord following spinal cord stimulation therapy in an in vivo neuropathic pain model

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Quantitative Capillary Zone Electrophoresis-Mass Spectrometry Reveals the N-glycome Developmental Plan during Vertebrate Embryogenesis

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Broad and thematic remodeling of the surfaceome and glycoproteome on isogenic cells transformed with driving proliferative oncogene

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Ribonucleic acid sequence characterization by negative electron transfer dissociation mass spectrometry

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A Genetic Toggle for Chemical Control of Individual Plk1 Substrates

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The Genetic Basis of Aneuploidy Tolerance in Wild Yeast

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High-Resolution Enabled 5-plex Mass Defect-based N,N-Dimethyl Leucine Tags for Quantitative Proteomics

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In-depth Quantification of Extracellular Matrix Proteins from Human Pancreas

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Proteomic and transcriptomic analyses of early and late-chronic Toxoplasma gondii infection shows novel and stage specific transcripts

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Acetyl-CoA Flux Regulates the proteome and Acetyl-Proteome to Maintain Intracellular Metabolic Crosstalk

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Maximizing Tandem MS Acquisition Rates for Shotgun Proteomics

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Interactive Peptide Spectral Annotator: A Versatile Web-Based Tool for Proteomic Applications

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Quantitative Proteomics for Analyses of Multiple Samples in Parallel with Chemical Perturbation

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Quantitative Proteomic Analysis of a Genetically Induced Prostate Inflammation Mouse Model via Custom 4-plex DiLeu Isobaric Labeling

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Proteomic Atlas of the Human Brain in Alzheimer’s Disease

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Islet proteomics reveals genetic variation in dopamine production resulting in altered insulin secretion

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5-plex Mass Defect-based N,N-Dimethyl Leucine Tags for Proteomics

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HOTMAQ Quantification Method for Targeted Proteomics

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Proteomics needs better chromatography

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NeuCode proteomics reveals Bap1 regulation of metabolism

Multi-omics

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Post-GWAS multiomic functional investigation of the TNIP1 locus in Alzheimer’s disease highlights a potential role for GPX3

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Mass Spectrometry-Based Multi-omics Integration with a Single Set of C. elegans Samples

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Rapid multi-omics sample preparation for mass spectrometry

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Severe COVID-19 Shares a Common Neutrophil Activation Signature with Other Acute Inflammatory States

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Practical Effects of Intramolecular Hydrogen Rearrangement in Electron Transfer Dissociation-Based Proteomics

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Developing mass spectrometry for the quantitative analysis of neuropeptides

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Proteomic and metabolomic profiling of acute and chronic stress events associated with military exercises

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Rapid preparation of human blood plasma for bottom-up proteomics analysis

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PKM2-TMEM33 axis regulates lipid homeostasis in cancer cells by controlling SCAP stability

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A multi-omic investigation of male lower urinary tract symptoms: Potential role for JC virus

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Large-Scale Multi-omic Analysis of COVID-19 Severity

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Multi-Omic Single-Shot Technology for Integrated Proteome and Lipidome Analysis

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Argonaut: A Web Platform for Collaborative Multi-omic Data Visualization and Exploration

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Urinary Amine Metabolomics Characterization with Custom 12-plex Isobaric DiLeu Labeling

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Urinary metabolomic and proteomic analyses in a mouse model of prostatic inflammation

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Tailoring a Global Iron Regulon to a Uropathogen

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Proteomic and transcriptomic analyses of early and late-chronic Toxoplasma gondii infection shows novel and stage specific transcripts

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Metandem: An online software tool for mass spectrometry-basedisobaric labeling metabolomics

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Maximizing Tandem MS Acquisition Rates for Shotgun Proteomics

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Single-Shot Capillary Zone Electrophoresis-Tandem Mass Spectrometry Produces Over 4400 Phosphopeptide Identifications from 220 ng Sample

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An Isoprene Lipid-Binding Protein Promotes Eukaryotic Coenzyme Q Biosynthesis

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MS-Helios: A Circos Wrapper To Visualize Multi-Omic Datasets

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Caloric restriction engages hepatic RNA processing mechanisms in rhesus monkeys

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Multi-omics reveal specific targets of the RNA-binding protein Puf3p in mitochondrial biogenesis

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Multi-omic mitoprotease profiling defines a role for Oct1p in coenzyme Q production

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Relative quantification of N-glycans

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Multi-omics evidence for inheritance of energy pathways in red blood cells

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A Combined Isobaric and Mass Difference Quantification Strategy (mdDiLeu)

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